Escherichia coli AVS0247 |
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Putative Escherichia coli AVS0247 RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 4,977,635 bp | CP124424 |
| plasmid pAVS0247-A: | 104,594 bp | CP124425 |
REBASE acronym: EcoS0247
Org_num: 67284
All begin QJB03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16680 | endoribonuclease SymE | |||
| 16685 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoS0247ORF16695P |
| 16690 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoS0247ORF16695P |
| 16695 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoS0247ORF16695P |
| 16700 | restriction endonuclease | |||
| 18745 | ash family protein | |||
| 18750 | S | S.EcosST131ORF19430P (100% identity) | AAAGNNNNGTT | S.EcoS0247ORF18755P |
| 18755 | M | M.EcosST131ORF19430P (100% identity) | AAAGNNNNGTT | M.EcoS0247ORF18755P |
| 18760 | R | EcosST131ORF19430P (100% identity) | AAAGNNNNGTT | EcoS0247ORF18755P |
| 18765 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pAVS0247-A | ||||
| 24890 | IS1-like element IS1A family transposase | |||
| 24895 | S | S.SenBR076ORFFP (9% identity) | S1.EcoS0247ORF24900P | |
| 24900 | M | M.SenceORFJP (99% identity) | M.EcoS0247ORF24900P | |
| 24905 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3480 | drug/metabolite exporter YedA | |||
| 3485 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS0247DcmP |
| 3490 | M | M.Ecost536DcmP (100% identity) | CCWGG | M.EcoS0247DcmP |
| 3495 | phosphohydrolase | |||
| 10545 | DNA-binding transcriptional regulator Fis | |||
| 10550 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS0247ORF10550P |
| 10555 | DUF2556 family protein | |||
| 11160 | ribulose-phosphate 3-epimerase | |||
| 11165 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS0247DamP |
| 11170 | cell division protein DamX | |||
| 16315 | helix-turn-helix domain-containing protein | |||
| 16320 | M | M2.EcosST131ORF21615P (100% identity) | GGTCTC | M1.EcoS0247ORF16320P |
| 16325 | M | M1.EcosST131ORF21615P (100% identity) | GGTCTC | M2.EcoS0247ORF16320P |
| 16330 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoS0247ORF16320P |
| 16335 | McrC family protein | |||
| 16910 | antiterminator Q family protein | |||
| 16915 | M | M2.EcosIH5ORF18590P (100% identity) | GTCGAC | M.EcoS0247ORF16915P |
| 16920 | R | R1.EcoEC0659ORF3890P (100% identity) | GTCGAC | EcoS0247ORF16915BP |
| 16925 | R | R2.EcoEC0659ORF3890P (100% identity) | GTCGAC | EcoS0247ORF16915AP |
| 16930 | TrmB family transcriptional regulator | |||
| 16930 | TrmB family transcriptional regulator | |||
| 16935 | M | M.Sso63633ORF22290P (100% identity) | M.EcoS0247ORF16935P | |
| 16940 | phage lysis protein EssD | |||
| 21925 | 71 aa hypothetical protein | |||
| 21930 | M | M.KpnYN1ORFGP (89% identity) | M.EcoS0247ORF21930P | |
| 21935 | helix-turn-helix transcriptional regulator | |||
| plasmid pAVS0247-A | ||||
| 24830 | 73 aa hypothetical protein | |||
| 24835 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoS0247ORF24835P |
| 24840 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16330 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 16335 | R | EcosST131McrCP (60% identity) | EcoS0247McrCP | |
| 16340 | R | EcosST131McrBP (100% identity) | EcoS0247McrBP | |
| 16345 | glycosyltransferase | |||
| 16695 | class I SAM-dependent DNA methyltransferase | |||
| 16700 | R | Ecou021MrrP (100% identity) | EcoS0247MrrP | |
| 16705 | BrnT family toxin | |||