Escherichia coli RHB47-C04 |
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Putative Escherichia coli RHB47-C04 RM systems
Ref: Matlock,W. unpublished
REBASE ref # 36523
| Sequence length: | GenBank #: | |
| Chromosome: | 4,674,160 bp | CP098955 |
| plasmid unnamed1: | 144,916 bp | CP098956 |
| plasmid unnamed2: | 53,464 bp | CP098957 |
| plasmid unnamed3: | 51,798 bp | CP098958 |
REBASE acronym: Eco47C04
Org_num: 66543
All begin NFL55_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1415 | type I restriction-modification system subunit M | |||
| 1420 | RM | Efe41C23ORF15565P (100% identity) | CTGAAG | Eco47C04ORF1425P |
| 1425 | M | M.EcoC9969I (100% identity) | CTGAAG | M.Eco47C04ORF1425P |
| 1430 | 62 aa hypothetical protein | |||
| 2220 | IS3-like element IS911 family transposase | |||
| 2225 | R | Eco47C15ORF2215P (100% identity) | Eco47C04ORF2225P | |
| 2230 | sigma 54-interacting transcriptional regulator | |||
| 4035 | GGDEF domain-containing protein | |||
| 4040 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.Eco47C04ORF4040P |
| 4045 | R | EcoZ144ORF4685P (100% identity) | CCWGG | Eco47C04ORF4040P |
| 4050 | 321 aa hypothetical protein | |||
| 5075 | copper-exporting P-type ATPase CopA | |||
| 5080 | M | M.Eco47C15ORF5070P (100% identity) | M.Eco47C04ORF5080P | |
| 5085 | ogr/Delta-like zinc finger family protein | |||
| 12780 | drug/metabolite exporter YedA | |||
| 12785 | V | V.Ecos195DcmP (100% identity) | V.Eco47C04DcmP | |
| 12790 | M | M.Ecos67DcmP (100% identity) | CCWGG | M.Eco47C04DcmP |
| 12795 | phosphohydrolase | |||
| 19135 | DNA-binding transcriptional regulator Fis | |||
| 19140 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco47C04ORF19140P |
| 19145 | DUF2556 family protein | |||
| 19760 | ribulose-phosphate 3-epimerase | |||
| 19765 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco47C04DamP |
| 19770 | cell division protein DamX | |||
| plasmid unnamed1 | ||||
| 23145 | group II intron reverse transcriptase/maturase | |||
| 23150 | M | M.SenBR027ORFEP (89% identity) | M.Eco47C04ORF23150P | |
| 23155 | 73 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 23655 | group II intron reverse transcriptase/maturase | |||
| 23660 | M | M.Ecoppa9ORF24505P (89% identity) | M.Eco47C04ORF23660P | |
| 23665 | 73 aa hypothetical protein | |||
| plasmid unnamed3 | ||||
| 24070 | group II intron reverse transcriptase/maturase | |||
| 24075 | M | M.SflN92ORF24820P (89% identity) | M.Eco47C04ORF24075P | |
| 24080 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1400 | zinc-ribbon domain-containing protein | |||
| 1405 | R | Eco47SOC04McrBP (100% identity) | Eco47C04McrBP | |
| 1410 | R | Eco47SOC04McrCP (100% identity) | Eco47C04McrCP | |
| 1415 | type I restriction-modification system subunit M | |||