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Putative Shigella flexneri STLIN_4 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
Sequence length: | GenBank #: | |
Chromosome: | 4,720,880 bp | CP058786 |
plasmid unnamed1: | 92,052 bp | CP058787 |
plasmid unnamed2: | 85,618 bp | CP058788 |
REBASE acronym: SflLIN4
Org_num: 56709
All begin HZT07_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
3875 | transposase | |||
3880 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | SflLIN4ORF3885P |
3885 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.SflLIN4ORF3885P |
3890 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.SflLIN4ORF3885P |
3895 | AAA family ATPase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
2240 | DUF2556 family protein | |||
2245 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.SflLIN4ORF2245P |
2250 | DNA-binding transcriptional regulator Fis | |||
9180 | phosphohydrolase | |||
9185 | M | M.SspS13DcmP (100% identity) | CCWGG | M.SflLIN4DcmP |
9190 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.SflLIN4DcmP |
9195 | drug/metabolite exporter YedA | |||
11140 | DUF977 family protein | |||
??? | M | M.SsoSE61ORF20220P (100% identity) | M.SflLIN4ORF11145P | |
11150 | IS66-like element ISEc22 family transposase | |||
15070 | replication endonuclease | |||
15075 | M | M.SflN92ORF14970P (100% identity) | GATC | M.SflLIN4ORF15075P |
15080 | TraR/DksA family transcriptional regulator | |||
19620 | HNH endonuclease | |||
19625 | R | SflSTLE4ORF19250P (100% identity) | SflLIN4ORF19625P | |
19630 | McrC family protein | |||
plasmid unnamed1 | ||||
23040 | glutamine--tRNA ligase | |||
23045 | M | M.SflLIN12ORF23470P (100% identity) | M.SflLIN4ORF23045P | |
23050 | 216 aa hypothetical protein | |||
plasmid unnamed2 | ||||
23590 | 103 aa hypothetical protein | |||
23595 | M | M.SflLIN11ORF23735P (100% identity) | M.SflLIN4ORF23595P | |
23600 | 73 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
19625 | HNH endonuclease | |||
19630 | R | SflSTLE4McrCP (100% identity) | SflLIN4McrCP | |
19635 | R | SflSTLE4McrBP (100% identity) | SflLIN4McrBP | |
19640 | DUF4942 domain-containing protein |