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Putative Escherichia coli EC_J_9 RM systems
Ref: Liu,Z. unpublished
REBASE ref # 30474
Sequence length: | GenBank #: | |
Chromosome: | 4,948,775 bp | CP075062 |
plasmid pCTX_J9_3: | 101,266 bp | CP075064 |
REBASE acronym: EcoECJ9
Org_num: 49783
All begin H4F96_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
4175 | transposase | |||
4180 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoECJ9ORF4185P |
4185 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoECJ9ORF4185P |
4190 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoECJ9ORF4185P |
4195 | AAA family ATPase | |||
14530 | transcription factor | |||
14535 | M | M.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | M.EcoECJ9ORF14535P |
14540 | S | S.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | S.EcoECJ9ORF14535P |
14545 | DUF4433 domain-containing protein | |||
14550 | macro domain-containing protein | |||
14555 | R | PmeBin330ORFCP (100% identity) | GAGNNNNNGTTY | EcoECJ9ORF14535P |
14560 | M48 family metallopeptidase | |||
20550 | 322 aa hypothetical protein | |||
20555 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | EcoECJ9ORF20560P |
20560 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.EcoECJ9ORF20560P |
20565 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.EcoECJ9ORF20560P |
20570 | endoribonuclease SymE | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1680 | cell division protein DamX | |||
1685 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoECJ9DamP |
1690 | ribulose-phosphate 3-epimerase | |||
2210 | DUF2556 family protein | |||
2215 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoECJ9ORF2215P |
2220 | DNA-binding transcriptional regulator Fis | |||
3850 | osmoprotectant transport activator ProQ | |||
3855 | M | M.SflFF24DndBP (100% identity) | M.EcoECJ9DndBP | |
3860 | DNA phosphorothioation system sulfurtransferase | |||
3855 | DNA sulfur modification protein DndB | |||
3860 | M | M.SflFF24DndCP (99% identity) | M.EcoECJ9DndCP | |
3865 | DNA sulfur modification protein DndD | |||
3860 | DNA phosphorothioation system sulfurtransferase | |||
3865 | M | M.EcoDFL5DndDP (100% identity) | M.EcoECJ9DndDP | |
3870 | DNA sulfur modification protein DndE | |||
3865 | DNA sulfur modification protein DndD | |||
3870 | M | M.SflFF24DndEP (100% identity) | M.EcoECJ9DndEP | |
3875 | DGQHR domain-containing protein | |||
3885 | accessory gene regulator B family protein | |||
3890 | R | EcosEC5DptHP (100% identity) | EcoECJ9DptHP | |
3895 | DNA phosphorothioation-dependent restriction | |||
3895 | R | SflFF24DptGP (100% identity) | EcoECJ9DptGP | |
3900 | DNA phosphorothioation-dependent restriction | |||
3895 | DNA phosphorothioation-dependent restriction | |||
3900 | R | SflFF24DptFP (100% identity) | EcoECJ9DptFP | |
3905 | porin family protein | |||
9465 | phosphohydrolase | |||
9470 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoECJ9DcmP |
9475 | V | V.SflFF64DcmP (100% identity) | V.EcoECJ9DcmP | |
9480 | drug/metabolite exporter YedA | |||
16240 | phage lysis protein EssD | |||
16245 | M | M.EcofEC1ORF6600P (100% identity) | M.EcoECJ9ORF16245P | |
16250 | TrmB family transcriptional regulator | |||
16290 | NinE family protein | |||
16295 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoECJ9ORF16295P |
16300 | recombination protein NinB | |||
20780 | DUF3780 domain-containing protein | |||
20785 | M | M.EcofEC1ORF1985P (100% identity) | M.EcoECJ9ORF20785P | |
20790 | DEAD/DEAH box helicase family protein | |||
plasmid pCTX_J9_3 | ||||
24870 | 97 aa hypothetical protein | |||
24875 | M | M.Xca80ORFEP (100% identity) | M.EcoECJ9ORF24875P | |
24880 | 73 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
plasmid pCTX_J9_3 | ||||
24740 | mobilization protein MobX | |||
24745 | R | SspS13ORF650P (100% identity) | EcoECJ9ORF24750P | |
24750 | M | M.SspS13ORF650P (100% identity) | M.EcoECJ9ORF24750P | |
24755 | 67 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
8260 | recombinase family protein | |||
8265 | R | EcoS11GmrSDP (100% identity) | EcoECJ9GmrSD2P | |
8270 | DinI-like family protein | |||
20570 | endoribonuclease SymE | |||
20575 | R | Ecos673GmrDP (100% identity) | EcoECJ9GmrDP | |
20580 | R | SflN101GmrSP (100% identity) | EcoECJ9GmrSP | |
20585 | DUF1127 domain-containing protein |