Helicobacter pylori SV380_1 |
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Putative Helicobacter pylori SV380_1 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,623,724 bp
GenBank #: MTWU00000000 (NZ_MTWU00000000)
REBASE acronym: Hpy380
Org_num: 24024
All begin BZK25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1055 | 499 aa hypothetical protein | |||
| 1060 | S | S.Hpy102ORF3095P (96% identity) | S.Hpy380ORF1060P | |
| 1065 | cadmium-translocating P-type ATPase | |||
| 3325 | cag pathogenicity island protein | |||
| 3330 | S | S.HpyPO08XVI (96% identity) | S.Hpy380ORF3335P | |
| 3335 | M | M.HpyCA12ORF7005P (96% identity) | M.Hpy380ORF3335P | |
| 3340 | R | HpyU102VIP (96% identity) | Hpy380ORF3335P | |
| 3345 | metal-dependent hydrolase | |||
| 1360 | hydroxyethylthiazole kinase | |||
| 1365 | R | HpySW06ORF2610P (95% identity) | Hpy380ORF1380P | |
| 1370 | 0 aa hypothetical protein | |||
| 1375 | S | S.HpyI020ORF4010P (96% identity) | S.Hpy380ORF1380P | |
| 1380 | M | M.HpyU413ORF4030P (93% identity) | M.Hpy380ORF1380P | |
| 1385 | type I restriction endonuclease | |||
| 6920 | RNA degradosome polyphosphate kinase | |||
| 6930 | S | S.HpyC026ORF5480P (98% identity) | S.Hpy380ORF6935P | |
| 6935 | M | M.HpyPE110ORF1925P (94% identity) | M.Hpy380ORF6935P | |
| ??? | R | HpyCOL104ORF2035P (73% identity) | Hpy380ORF6935P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4800 | peptidase S41 | |||
| ??? | R | Hpy328ORF1020P (95% identity) | Hpy380ORF4810P | |
| 4810 | M | M.HpyME44III (99% identity) | GANTC | M.Hpy380ORF4810P |
| ??? | hypothetical protein | |||
| 7905 | 144 aa hypothetical protein | |||
| 7910 | M | M.HpyU428XII (97% identity) | M.Hpy380ORF7910P | |
| 7915 | flagellar biosynthesis protein FlgM | |||
| 4810 | DNA methyltransferase | |||
| ??? | RM | HpySW30ORF6505P (89% identity) | Hpy380ORF4815P | |
| 4825 | nicotinate-nucleotide diphosphorylase | |||
| 7700 | 371 aa hypothetical protein | |||
| 7705 | M | M.Hpy5009ORF8015P (95% identity) | ATTAAT | M.Hpy380ORF7705P |
| 7710 | glycosyltransferase 9 family protein | |||
| 1680 | glycerol-3-phosphate dehydrogenase | |||
| 1685 | RM | HpyIR1ORF3195P (66% identity) | Hpy380ORF1685AP | |
| 1690 | RM | helicase | Hpy380ORF1685BP | |
| 1695 | 270 aa hypothetical protein | |||
| 7715 | GTP-binding protein TypA | |||
| 7720 | M | DNA methyltransferase | ACNGT | M.Hpy380ORF7720P |
| 7725 | 62 aa hypothetical protein | |||
| 5795 | 406 aa hypothetical protein | |||
| ??? | R | HpyNCI18VIIIP (96% identity) | Hpy380ORF5805P | |
| 5805 | M | M.HpyCOL306IX (99% identity) | GTAC | M.Hpy380ORF5805P |
| 5810 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3005 | DNA polymerase I | |||
| 3010 | S | S.HpyPO106ORF7475P (94% identity) | S.Hpy380ORF3015P | |
| 3015 | RM | HpyMT5135ORF6950P (99% identity) | Hpy380ORF3015P | |
| 3020 | amidophosphoribosyltransferase | |||
| 7115 | Laminin subunit alpha-2 precursor | |||
| 7120 | R | HpyP007VIIP (98% identity) | TCNNGA | Hpy380ORF7125P |
| 7125 | M | M.HpyU437XII (99% identity) | TCNNGA | M.Hpy380ORF7125P |
| 7130 | acetyl-CoA carboxylase biotin carboxylase | |||
| 6045 | exodeoxyribonuclease VII large subunit | |||
| 6050 | M | M.HpyLIM5X (98% identity) | TCGA | M.Hpy380ORF6050P |
| 6055 | 75 aa hypothetical protein | |||
| 7510 | ATP-dependent DNA helicase | |||
| 7515 | M | M.HpyCA4IX (97% identity) | GTNNAC | M.Hpy380ORF7515P |
| 7520 | R | HpyBR19ORF4485P (99% identity) | GTNNAC | Hpy380ORF7515P |
| 7525 | flagellar hook protein FlgE | |||
| 6055 | 75 aa hypothetical protein | |||
| 6060 | R | HpyPE140ORF1285P (83% identity) | CCGG | Hpy380ORF6065P |
| 6065 | M | M.HpyU417III (100% identity) | CCGG | M.Hpy380ORF6065P |
| 6070 | ATP-dependent chaperone ClpB | |||
| 7820 | integrase | |||
| 7825 | M | M.HpyU417ORF2255P (54% identity) | ACNGT | M.Hpy380ORF7825P |
| 7830 | R | HpyGM8ORF2420P (98% identity) | ACNGT | Hpy380ORF7825P |
| 7835 | DNA (cytosine-5-)-methyltransferase | |||
| 7830 | restriction endonuclease | |||
| 7835 | M | M.HpyU428ORF2270P (98% identity) | ACGT | M.Hpy380ORF7835P |
| 7840 | R | HpyU416ORF2410P (96% identity) | ACGT | Hpy380ORF7835P |
| 7845 | catalase | |||
| 1785 | 3-5 exonuclease | |||
| 1790 | M | M.HpySP314IV (96% identity) | M.Hpy380ORF1790P | |
| 1795 | R | HpySP317ORF3285P (92% identity) | Hpy380ORF1790P | |
| 1800 | acetone carboxylase subunit gamma | |||
| 3145 | permease | |||
| 3150 | M | M2.HpyCOL307IV (100% identity) | CCATC | M1.Hpy380ORF3150P |
| 3155 | M | M2.HpyU201IV (99% identity) | CCATC | M2.Hpy380ORF3150P |
| 3160 | R | HpyLIM3IIP (98% identity) | Hpy380ORF3150P | |
| 3165 | 388 aa hypothetical protein | |||
| 3240 | 176 aa hypothetical protein | |||
| 3245 | RM | HpyME40XIV (79% identity) | Hpy380ORF3245P | |
| 3250 | DEAD/DEAH box helicase | |||
| 2470 | agmatine deiminase | |||
| 2475 | M | M1.HpyCO6V (98% identity) | CCTC | M1.Hpy380ORF2475P |
| 2480 | M | M2.HpyU415ORF255P (97% identity) | CCTC | M2.Hpy380ORF2475P |
| 2485 | 0 aa hypothetical protein | |||
| 2480 | restriction endonuclease | |||
| 2490 | M | M.HpyCR4ORFCP (94% identity) | M.Hpy380ORF2490P | |
| ??? | R | HpyU421XIP (77% identity) | Hpy380ORF2490P | |
| 2505 | 36 aa hypothetical protein | |||
| 1205 | osmoprotection binding protein | |||
| 1210 | R | HpySP507IVP (100% identity) | CGWCG | Hpy380ORF1160P |
| 1215 | M | M.Hpy1198ORF4755P (100% identity) | CGWCG | M.Hpy380ORF1160P |
| 1220 | osmoprotection protein | |||
| 5555 | serine acetyltransferase | |||
| ??? | R | HpyU421IP (100% identity) | Hpy380ORF5570P | |
| 5570 | M | M.HpyU304I (98% identity) | CATG | M.Hpy380ORF5570P |
| 5575 | hydrolase | |||
| 3420 | 68 aa hypothetical protein | |||
| 3425 | R | HpyGM9ORF7310P (98% identity) | Hpy380ORF3425P | |
| 3430 | two-component system response regulator | |||
| 2715 | 326 aa hypothetical protein | |||
| 2720 | M | M.HpyNG06VII (97% identity) | GATC | M.Hpy380ORF2720P |
| 2725 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4170 | type III restriction endonuclease subunit R | |||
| ??? | R | HpyU424ORF7655P (88% identity) | Hpy380ORF4180P | |
| 4180 | M | M.HpyJA110ORF7525P (94% identity) | M.Hpy380ORF4180P | |
| 4185 | endonuclease | |||
| 4240 | rod shape-determining protein MreC | |||
| 4245 | R | HpyU102ORF7705P (92% identity) | Hpy380ORF4250P | |
| 4250 | M | M.HpyBR20ORF7435P (95% identity) | M.Hpy380ORF4250P | |
| 4255 | two-component system response regulator | |||
| 3245 | type II restriction endonuclease | |||
| 3250 | R | HpyF017ORF7460P (96% identity) | Hpy380ORF3255P | |
| 3255 | M | M.HpyGRE040ORF7400P (97% identity) | M.Hpy380ORF3255P | |
| 3260 | ATP-dependent DNA helicase RecG | |||