Salmonella enterica subsp. enterica serovar Typhimurium STm12 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium STm12 RM systems
Ref: Hogg,G. et al. Genome Announc 1 (3) (2013)
REBASE ref # 16105
Contig set: 4,895,968 bp
GenBank #: AMEG00000000 (NZ_AMEG00000000)
REBASE acronym: SenSTm12
Org_num: 10787
All begin B580_, ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22989 | endoribonuclease SymE | |||
| 22994 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenSTm12ORF22999P |
| 22999 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenSTm12ORF22999P |
| 23004 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenSTm12ORF22999P |
| 23009 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17322 | DNA-binding protein Fis | |||
| 17327 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSTm12ORF17327P |
| 17332 | 54 aa hypothetical protein | |||
| 10143 | DMT superfamily transporter inner membrane | |||
| 10148 | V | V.StyUK1DcmP (100% identity) | V.SenSTm12DcmP | |
| 10153 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenSTm12DcmP |
| 10158 | hydrolase | |||
| 17 | DUF2732 family protein | |||
| 19 | M | M.SenSTm9ORF23047P (100% identity) | GATC | M.SenSTm12ORF24060P |
| 20 | 70 aa hypothetical protein | |||
| 23650 | 62 aa hypothetical protein | |||
| 23655 | M | M.StyUK1ORFAP (100% identity) | M.SenSTm12ORF23655P | |
| 23660 | 73 aa hypothetical protein | |||
| 22832 | ABC-type sugar/spermidine/putrescine | |||
| 22837 | RM | SenSTm9ORF21385P (100% identity) | GATCAG | SenSTm12ORF22837P |
| 22842 | DNA repair ATPase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1886 | inner membrane protein | |||
| 1891 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSTm12ORF1891P |
| 1896 | R | StyUK1IP (99% identity) | CAGAG | SenSTm12ORF1891P |
| 1901 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 23004 | type I restriction enzyme EcoKI subunit R | |||
| 23009 | R | StyUK1MrrP (100% identity) | SenSTm12MrrP | |
| 23014 | toxin-antitoxin system, toxin component | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10383 | 129 aa hypothetical protein | |||
| 10388 | M | M.StyUK1V (100% identity) | GATC | M.SenSTm12ORF10388P |
| 10393 | phage protein | |||