|
Putative Lactobacillus johnsonii pf01 RM systems
Ref: Lee,J.H. et al. unpublished
REBASE ref # 13367
Sequence length: | GenBank #: | |
Chromosome: | (contig set) | AFQJ00000000 |
Chromosome: | 1,933,261 bp | CP024781 |
plasmid pLJPF01S: | 13,905 bp | CP024783 |
REBASE acronym: Ljopf01
Org_num: 7503
All begin PF01_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
753 | 327 aa hypothetical protein | |||
754 | S | S2.Ljo9203ORF1060P (50% identity) | CAGNNNNNGCT | S1.Ljopf01II |
755 | integrase | |||
756 | S | S2.LgaK7ORF6265P (53% identity) | S2.Ljopf01IIP | |
757 | M | M.Ljo9203ORF1060P (99% identity) | CAGNNNNNGCT | M.Ljopf01II |
758 | R | Ljo9203ORF1060P (99% identity) | CAGNNNNNGCT | Ljopf01IIP |
759 | 305 aa hypothetical protein | |||
Chromosome | ||||
??? | S | S2.LgaK7ORF6265P (53% identity) | S2.Ljopf01IIP | |
??? | S | S2.Ljo9203ORF1060P (50% identity) | CAGNNNNNGCT | S1.Ljopf01II |
??? | M | M.Ljo9203ORF1060P (99% identity) | CAGNNNNNGCT | M.Ljopf01II |
??? | R | Ljo9203ORF1060P (99% identity) | CAGNNNNNGCT | Ljopf01IIP |
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1844 | replication-associated protein RepC | |||
1845 | R | R2.Ljopf01ORFBP (59% identity) | GGATG | Ljopf01IP |
1846 | M | M.Ljopf01ORFBP (26% identity) | GGATG | M1.Ljopf01I |
plasmid pLJPF01S | ||||
??? | M | M2.Ljopf01I (72% identity) | M.Ljopf01ORFBP | |
??? | R | Ljopf01IP (37% identity) | R1.Ljopf01ORFBP | |
??? | R | Ljopf01IP (59% identity) | R2.Ljopf01ORFBP | |
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
746 | 47 aa hypothetical protein | |||
747 | R | Ljo9203MrrP (98% identity) | Ljopf01MrrP | |
748 | 42 aa hypothetical protein | |||
1542 | exodeoxyribonuclease III | |||
1543 | R | Ljopf01ORFAP (99% identity) | Ljopf01ORF1543P | |
1544 | cell surface hydrolase | |||
Chromosome | ||||
??? | R | Ljopf01ORF1543P (99% identity) | Ljopf01ORFAP | |
??? | R | Ljo9203MrrP (98% identity) | Ljopf01MrrP |